BtaEX6046768 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100642919-100647165:+
Coord C1 exon
chr11:100642919-100643182
Coord A exon
chr11:100646369-100646513
Coord C2 exon
chr11:100647044-100647165
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTGCTGGTCCTTGCCCACAGGTG
3' ss Score
11.47
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCGTACCCATCTCCCTGGTGATCAACTCCACGGGCCTGCGGGTACCGGGCCTCCTGGACTCAGTGGAGCTCTCACACAGCTCAGGGCGGTCCCTCCTGACTCTGCCCACGCAGCCCCTCTCCAACGGATCAACCCACCAGCTGTGGGGTGGGCCGCCCTTCCACAGCCCCCAGGAGCGTTTCTACCTCAAGGTGAAGGGCAAGGACCATGAAGGAAACCCTCTCCTCCGTGTCTCCGGAGTTTCCTACCGTGGGGTGATTCCAG
Seq A exon
GTGCCCCCCTGGTCAGCATGCCCCCCAGGATCCATGGCTACCTACACCAGCCCCTGCAGGTCTCCTGCTCTGTGCACAGCGCCCTCCCCTTCCGGCTACAGCTGTGGCGGGACGGAGCCAGGCTGGGTGAGGAGAGGCGCTTTCG
Seq C2 exon
GGAGTCAGGGAACAGCAGCTGGGAGATTCCACGGGCCTCCAAGGCCGAAGAAGGCACGTATGAGTGCACGGCAGTCAGCCGGGCGGGGACCGGACGAGCAAAGACTCAGATCGTCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.020 C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
PF0004720=ig=PU(56.9=67.3)
C2:
PF0004720=ig=PD(41.4=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACTCAGTGGAGCTCTC
R:
GGAATCTCCCAGCTGCTGTTC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]