MmuEX6100406 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31346462-31350640:+
Coord C1 exon
chr2:31346462-31346725
Coord A exon
chr2:31349978-31350122
Coord C2 exon
chr2:31350519-31350640
Length
145 bp
Sequences
Splice sites
3' ss Seq
AACCCTGTGCTTGCCTTCAGGTG
3' ss Score
10.76
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GCGTACCCATCTCCCTGGTGATCAACTCTACGGGCCTGCAGGCACCTGGCCACCTTGAGTCTGTGGAGCTCTCACACAGCTCGGGGAGGTCCCTTCTCACTCTGCCCACACAACTCCTCTCCAATGGGTCCACCCATCAGCTGTGGGCTGGGCCACCCTTCCACGTGCCGAAGGAACGCTTTTATCTCAAGGTGAAGGGCAAAGACCACGAGGGGAATCCCCTCCTTCGTGTCTCTGGAGTTTCCTACAGTGCAGTGGCCCCAG
Seq A exon
GTGTGCCGCTGGTCAGCATGGCTCCTAAGATCCATGGTTACCTACAGCAGCCCCTGCTGGTGTCCTGCTCTGTGTATAGCACCCTCCCCTTCCAGCTACAGCTGCAGAGAGATGGAGAGAGGCTGGGCGAGGAGCGGTACTTTCA
Seq C2 exon
AGAGTCGGGAAACAGCAGCTGGGAGATCCCGAGAGCCTCTAAGGCTGAGGAAGGCACGTACCAGTGCATAGCCGTCAGCAGAGCTGGGTCAGGACGAGCCAGCGCCCAGATTGTCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'1-22,'1-11,8-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.082 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
PF138951=Ig_2=PU(52.9=93.9)
C2:
PF138951=Ig_2=PD(46.0=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCTGCCCACACAACTC
R:
CTGACGGCTATGCACTGGTAC
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types