BtaEX6046771 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100638320-100640485:+
Coord C1 exon
chr11:100638320-100638491
Coord A exon
chr11:100639140-100639246
Coord C2 exon
chr11:100640365-100640485
Length
107 bp
Sequences
Splice sites
3' ss Seq
AGGTCTTGGGGCTTCCACAGGGA
3' ss Score
5.08
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGCTGAAGTGGGTGGAGTCAGCCCTCCAGGCCTCCAAGGTGCACCTGCTGTCCACGGACCATGAGGAGGGCGGCGAGCACACGTGGAAGATCCCCTTTGACCCCAGCCTGAAGGAGGTCACCATCTCCCTGAGTGGCCCAGGGCCCGAGATCGAAGTCCGAGACCCGCTGG
Seq A exon
GGAGGATCCTGCAGAGGGATGACGGCCTCAATGTGCTCCTCAGCATCCCTGACTCTGCCAAGGTCGTGGCCTTTAAGCCTGAGCATTCCGGGCTGTGGTCCATCAAG
Seq C2 exon
ATCTACAGCAGCGGCCGCCATTCGGTCAGGATCACGGGCATCAGCAACATTGACTTCCGAGCTGGCTTCTCCACTCAGCCCTCCCTGGACCTCAACCACACTATCGAGTGGCCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(2.3=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCACGGACCATGAGGAG
R:
TTGTAGGGGCCACTCGATAGT
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]