MmuEX6100408 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31343056-31344589:+
Coord C1 exon
chr2:31343056-31343227
Coord A exon
chr2:31344012-31344118
Coord C2 exon
chr2:31344469-31344589
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGTACCCGGGGCTTTCACAGGAA
3' ss Score
3.82
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGTTAAAGTGGGTGGAGTCAGCAATCCAGGCCTCCAAAGTTCATCTGCTGTCTGCAGACCATGAGGAGGAGGGCGAGCACACGTGGAGAATCCCCTTTGACCCCAGCCTGAAGGAGGTCACCATTGCACTGAGCGGACCAGGGCCTGAGATTGAAGTCCGGGACCCACTGG
Seq A exon
GAAGGGTCCTGCAGACGGATGAAGGCCTCAATGTGCTCCTCAACATTCCAGACTCAGCCAAGGTCGTAGCCTTTAAGCCTGAGCACCCAGGACTGTGGGCCATCAAG
Seq C2 exon
GTATACAGCAGCGGCCGCCACTCAGTGAGGATATCAGGCATCAGCAACATCAACTTCCGAGCCGGCTTCTCCATGCAGCCCTCCCTGGACCTCAACCACACCATCGAGTGGCCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'4-9,'4-8,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(2.3=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCCAAAGTTCATCTGCT
R:
CACTCGATGGTGTGGTTGAGG
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types