BtaEX6047042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103134237-103136050:-
Coord C1 exon
chr11:103135764-103136050
Coord A exon
chr11:103134553-103134768
Coord C2 exon
chr11:103134237-103134340
Length
216 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCTGCCCCCTCCAGGAG
3' ss Score
10.8
5' ss Seq
AGGGTATGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
CTCCAGTTCCAGCTCTGAAACCAGCTGCCGAGCCAGAGCCCACACTAGGCCCAGACCTCGAGCCCGCTCCGGCACTGGCCCCAGAGCCAGCCCTGATGCCAGCTCCGACGCTGCCTTCAGAGCTCGAGCCGGCTCTCTCGCAAACCCTAGAGCTCGAGCCGCCTGCAGCCCCAGACCCCCCCTGGCCTTTGCCCGTGGCTACAGAGAATGGGCTGGGGGAGGAGAAGCCCCACCTCCTGGCATTCCCTCCTGACCTTGTGGCAGAGCAGTTCACGCTCATGGATGCG
Seq A exon
GAGCTGTTCAAGAAAGTGGTCCCCTACCACTGCCTGGGCTCCATCTGGTCCCAGCGGGACAAGAAGGGCAAGGAGCACCTGGCCCCCACCGTGCGTGCCACCGTCGCCCAGTTCAACAGCGTGGCCAACTGCGTCATCACCACCTGCCTCGGGGACCGGAGCGTGTCAGCCCGCCACAGGGCCAGGGTGGTGGAGCACTGGATCGAGGTGGCCAGG
Seq C2 exon
GAGTGCCGGGTCCTCAAGAACTTCTCCTCCCTCTACGCCATCCTCTCTGCCCTGCAGAGCAACTCCATCCACCGGCTGAAGAAGACGTGGGAAGAGGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-'4-10,'4-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(7.4=16.7)
A:
PF0061714=RasGEF=FE(33.0=100)
C2:
PF0061714=RasGEF=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGCTCTGAAACCAGCT
R:
GAGAAGTTCTTGAGGACCCGG
Band lengths:
308-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]