GgaEX6015301 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7453522-7454200:-
Coord C1 exon
chr17:7454079-7454200
Coord A exon
chr17:7453746-7453961
Coord C2 exon
chr17:7453522-7453625
Length
216 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCCTTTATCTTCTAGGAG
3' ss Score
12.54
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
CTGTGGACCACAGTGGCTGCACGTTCCAGCTGGTGGAGGAGAACGGGGTCGGGGATGGGAAGTCAGATTTCCTCTCCTTCTCCCCCGAGATGGTGGCAGAGCAGTTCACACTAATGGATGCT
Seq A exon
GAGCTGTTTAAGAAAGTGGTGCCTTACCACTGCCTGGGCTGCATCTGGTCCCAGCGAGACAAGAAGGGCAAAGAACACCTGGCACCCACCATCCGTGCCACGGTCTCGCAGTTCAATAGCGTGGCCAACTGTGTCATCGCCACGTGCCTCGGGGATCGGACCCTGAAGCCACAGCAGAGGGCTAAAGTGGTGGAGCGGTGGATCGAAGTGGCTCGG
Seq C2 exon
GAGTGCCGCATCCTGAAGAACTTCTCCTCGCTCAGAGCCATCCTTTCAGCTCTGCAGTGCAATGCTGTGCACCGGCTGAAGAAGACCTGGGATGAGGTCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(7.3=39.0)
A:
PF0061714=RasGEF=FE(32.6=100)
C2:
PF0061714=RasGEF=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCACAGTGGCTGCAC
R:
CATCCCAGGTCTTCTTCAGCC
Band lengths:
212-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]