BtaEX6047241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103997313-103999376:-
Coord C1 exon
chr11:103999148-103999376
Coord A exon
chr11:103998349-103998550
Coord C2 exon
chr11:103997313-103997466
Length
202 bp
Sequences
Splice sites
3' ss Seq
TGCTGCCTGCCCACCTCCAGCTC
3' ss Score
7.69
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACCCGTGCCACAATGGGGGCTCCTGCACAGATGGCATCAACACGGCCTTCTGCGACTGCCTGCCCGGCTTCCAGGGCGCCTTCTGCGAGGAGGACATCAACGAGTGCGCCAGCAGCCCCTGCCGCAACGGCGCCAACTGCACCGACTGTGTGGACAGCTACACCTGCACCTGCCCCACGGGCTTCAGCGGCATCCACTGCGAGAACAACACGCCCGACTGCACGGAGAG
Seq A exon
CTCCTGCTTCAACGGCGGTACCTGCGTGGATGGCATCAACTCCTTCACCTGCCTGTGTCCACCTGGCTTCACGGGCAGCTACTGCCAACATGACGTCAACGAGTGTGACTCTCGGCCCTGCCTGCACGGCGGCACCTGCCACGACAGCTACGGCACCTACACGTGCACCTGCCCGCAGGGCTACACAGGCCTCAACTGCCAG
Seq C2 exon
ACCCTCGTGCGCTGGTGCGACTCGTCCCCCTGCAAGAATGACGGCCGGTGCTGGCAGACCAACGCGCTCTACCGCTGTGAGTGCCACAGCGGCTGGACCGGCCTCTACTGTGACGTGCCCAGCGTCTCCTGCGAGGTGGCCGCGCGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'24-19,'24-18,25-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
A:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
C2:
PF0000822=EGF=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCACAGATGGCATCAAC
R:
TGGCACTCACAGCGGTAGAG
Band lengths:
295-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]