BtaEX6047276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030384 | SURF1
Description
surfeit 1 [Source:HGNC Symbol;Acc:HGNC:11474]
Coordinates
chr11:104317838-104319342:-
Coord C1 exon
chr11:104319050-104319342
Coord A exon
chr11:104318864-104318915
Coord C2 exon
chr11:104317838-104317971
Length
52 bp
Sequences
Splice sites
3' ss Seq
GGCCCCTCGCGTCTCCGCAGGCC
3' ss Score
9.88
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTCGGGGCCCGCCGTGGGGTTCCCGCACCCCACCCCCGCCCCGCTCCAACCTTGCAGGCGCCGGGCTCCAGCCGCAGGCTCGGGTGCTCGCGCAGAAAGGCGCGCACGTCTGCCGGCAGCTCGCTCATGGCTCGGCGCGCGGAGCTGGGCACCGACTTCGCCGGAACCACGTGGGCCGGGGGCGGGGCCGGGGGCGGGGCCGAACGGCGCCCGGGAAGCACACGCCTCCAGGGCCCGGAAGTGAGCGGGCGGGGCGATGGCGGCGGCGCGGCAACTGGGGCTCCGCGCTGCGG
Seq A exon
GCCCCGGCCAGCGTCGTCTGGAGGAGCGTCCTGGGGATCGCCCCGCGCGCAG
Seq C2 exon
GGTTGGCCTGGAGGCCCCGCAGGTGTGGCAGCTCTTCAGCCGAAGCAACTGCCACAAAAACCGAAGATGAGTCCTTCCTCCGCTGGTTTCTGCTTCTCATTCCTGTGACTGCCTTTGGCCTGGGGACGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030384-'15-14,'15-13,17-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0210410=SURF1=PU(6.4=31.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACACGCCTCCAGG
R:
CGGTTTTTGTGGCAGTTGCTT
Band lengths:
142-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]