MmuEX0045777 @ mm10
Exon Skipping
Gene
ENSMUSG00000015790 | Surf1
Description
surfeit gene 1 [Source:MGI Symbol;Acc:MGI:98443]
Coordinates
chr2:26915596-26916300:-
Coord C1 exon
chr2:26916257-26916300
Coord A exon
chr2:26915955-26916006
Coord C2 exon
chr2:26915596-26915729
Length
52 bp
Sequences
Splice sites
3' ss Seq
GGCCTGTCTGGTCCCCGCAGGCC
3' ss Score
10.06
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGCGACGGATGACGCGGTGGTCGCAATGGGCCTACGCGGGACGG
Seq A exon
GCCCAGTTCTGCGCTGTCAGGAGGAGCGTCTTTGGGTTTTCTGTCCGCTCAG
Seq C2 exon
GGATGGTCTGTAGGCCACGCAGGTGTTGCAGTTCTACTGCTGAAACAGCCGCCGCTAAAGCAGAGGACGATTCTTTTCTCCAGTGGTTCCTGCTTTTAATCCCTGCTACTGCTTTTGGCCTGGGGACTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015790-'0-5,'0-1,2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0210410=SURF1=PU(41.2=31.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCGCAATGGGCCTAC
R:
GCCAAAAGCAGTAGCAGGGAT
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types