DreEX0076567 @ danRer10
Exon Skipping
Gene
ENSDARG00000003592 | surf1
Description
surfeit 1 [Source:ZFIN;Acc:ZDB-GENE-041108-2]
Coordinates
chr5:32680952-32681959:+
Coord C1 exon
chr5:32680952-32681147
Coord A exon
chr5:32681261-32681339
Coord C2 exon
chr5:32681832-32681959
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTTTATATTTTTGTCCTTAGGCT
3' ss Score
10.28
5' ss Seq
GGTGTAATT
5' ss Score
-0.75
Exon sequences
Seq C1 exon
GCGCATGTGCAGGATGTCTCAGAATCCCCGGAAATGGTTACATTGAAAACATTCCCCTGAAAGCAGAAGGCATGTTATGTAGTCGACCTGTTTTGAAAATTTCAGTGTTTGGGTTACAGCTATTTAGGCTAACATGAGCAGTTTTAGATTAATGCTGATGATCTCTAACCAGACATTTAAGATTCTTCGATGCAGT
Seq A exon
GCTCTCTTTTCACCAAGGAGGACTCTGTTTGTGACACGACAGAGTTTATTCAGACGTCAGGATGCTCCAGTGCTCCGGT
Seq C2 exon
ATAACCTGGCCAGGTTTAGTCAACAATCAACTTCCACTGTCGAAGGAACAAAGAAAGGAGAAGACACCTTTCTGAAGTGGTTTCTCTTGTTGATACCCGTCACCACCTTTTGTCTTGGAACATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003592-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0210410=SURF1=PU(6.4=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCCTGAAAGCAGAAGGC
R:
TGATTGTTGACTAAACCTGGCCA
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]