GgaEX0004196 @ galGal3
Exon Skipping
Gene
ENSGALG00000003187 | SURF1_CHICK
Description
NA
Coordinates
chr17:7538437-7539173:-
Coord C1 exon
chr17:7539016-7539173
Coord A exon
chr17:7538683-7538761
Coord C2 exon
chr17:7538437-7538564
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATGTTATTTTGTTTCCTTAGATA
3' ss Score
9.81
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAAGCGGCGGTACCATAGAGACGGCGAGCTAGAGGGGCGTCCGCCGGGGGCGGCCTGGGCGGAGTGGGGGGGGTGGCGGCGGTGTTGTTGCCCCATGGCGACGTGGGGGCTGCTGCTGCGCGCCGGGCCGCGGCTGCTGCGGGAGCGAAGGGCCCGG
Seq A exon
ATATCACACTGCTTGCTCAGAAGAACATTTTTCGGGTTTCCCCGAACGAAAGCAGGTTCTGCTGTGACCCAGCAGGGAG
Seq C2 exon
ACGTTTGCCTGAGGCTCTGCAGCCCACGAAGCTCCACGACAGCCACCAGTGCAGCTGGAGAGGACGCCTGGCTGAAGTGGGGCCTCCTCCTCGTGCCCCTGACTGCATTCTGTCTCGGCACATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003187-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0210410=SURF1=PU(6.4=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAGAGACGGCGAGCTAGA
R:
CTTCGTGGGCTGCAGAGC
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]