MmuALTA0017625-5/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015790 | Surf1
Description
surfeit gene 1 [Source:MGI Symbol;Acc:MGI:98443]
Coordinates
chr2:26915596-26916006:-
Coord C1 exon
chr2:26915955-26916006
Coord A exon
chr2:26915647-26915769
Coord C2 exon
chr2:26915596-26915646
Length
123 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCAGTTCTGTTTGTTCTAGGGC
3' ss Score
9.61
Exon sequences
Seq C1 exon
GCCCAGTTCTGCGCTGTCAGGAGGAGCGTCTTTGGGTTTTCTGTCCGCTCAG
Seq A exon
GGCTTCTGACCCCATGCCAGTGTTGTAAAACTTCCTCCAGGGATGGTCTGTAGGCCACGCAGGTGTTGCAGTTCTACTGCTGAAACAGCCGCCGCTAAAGCAGAGGACGATTCTTTTCTCCAG
Seq C2 exon
TGGTTCCTGCTTTTAATCCCTGCTACTGCTTTTGGCCTGGGGACTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015790-2-7,2-6,2-5,2-4,2-3,2-2-5/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0210410=SURF1=PU(6.4=31.1)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCTGCGCTGTCAGG
R:
CCAAGTCCCCAGGCCAAAAG
Band lengths:
98-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types