BtaEX6047315 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104391740-104394932:+
Coord C1 exon
chr11:104391740-104391820
Coord A exon
chr11:104392669-104392850
Coord C2 exon
chr11:104394797-104394932
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGACGGCCCCTCGCCCACAGCGG
3' ss Score
8.83
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
AGTACGTCACGTTCCTGACCGTCACCCCCAACCTCACCAGCATCTACATCATCAACCGCAGGCCTCTCTTCACACACCTGG
Seq A exon
CGGTGAGGGTGCGTGGCCGCTACGTTGTGGCCGGAAACGGGAGCGCGTCTGCCAGCACCAGCTACCCCTCCCTCCTGGAGGACAACCGCGTGGAGTACAGGGTCACCCTGAGCGAGGACCGGCTGCCCCGCCGGGAGGAGATCCGCATCCGGGGCCCCACCCGGGACGACATGGAGATCCAG
Seq C2 exon
GTTTACAGGCGCTACAGTGAGGAGTACGGCAGCCCCGCCCGCCCCGACATCACCTTCATCTACTTCCAGCCGGAGCAGCGGCGGGCCTGGGCGTGGGTCCCGGTGCAGGGGCCCTGCTCCGTGAGCTGCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'17-24,'17-23,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.180 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTCACGTTCCTGACCGTC
R:
GCTCCGGCTGGAAGTAGATGA
Band lengths:
155-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]