BtaEX6053640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58116099-58122447:+
Coord C1 exon
chr10:58116099-58116152
Coord A exon
chr10:58119780-58120007
Coord C2 exon
chr10:58122439-58122447
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGTCTCATCCTACAGCGT
3' ss Score
10.54
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAGAAGAAAGACCACAGATTAGAGGTGCAGAACTGGAATATGAGTCACTCAAG
Seq A exon
CGTCAAGAACTAGAGTCAGAAAACAAAAAACTGAAAAATGAGCTAAATGAGTTACGAAAGGCCCTCAGTGAGAAAAGTGCCCCTGAGGTGACTGCCCCAGGCGCGCCAGCCTACCGTGTCCTCATGGAGCAGCTGACGTCTGTGAGTGAGGAGCTTGATGTCCGCAAGGAGGAAGTCCTCATCCTGAGGTCTCAGCTGGTGAGCCAGAAGGAAGCCATACAACCCAAG
Seq C2 exon
GATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'34-33,'34-32,35-33=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.599 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]