DreEX6066370 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39033025-39037597:+
Coord C1 exon
chr18:39033025-39033081
Coord A exon
chr18:39036144-39036371
Coord C2 exon
chr18:39037497-39037597
Length
228 bp
Sequences
Splice sites
3' ss Seq
TGAACATCTTAAATCTTCAGCGT
3' ss Score
6.33
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATGATGAAGAACATAAGAAAGCTCGTGGTGCAGAGCTGGAGTATGAATCTCTCAAG
Seq A exon
CGTCAGGAGCTGGAGTCTGAGAACAAGAAGCTGAAGCATGATCTGAATCAGATGCGTCAGTCTCTCAGAGGCAGCGTTGAGGCCGGTTCTGGTGCTCCTGGTTCTCCTGCGTACACCGTTCTTCTGGATCAGCTCAATGCCTCCAACGAGGAACTGGAAGTGCGCAAAGAGGAGGTGCTCATCCTGCGCTCACAGCTCGTCAGTCAGAAAGAAGCCATGCAGCACAAG
Seq C2 exon
ACGACTATGACTGAACCTCTGCCATACATTGAGGATGTGCAGAAGCTCACTGATGCCAAGGAGATCTCACAGGCCTACATGGGCCTCAAAGACACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'35-34,'35-31,36-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.658 C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAAGAACATAAGAAAGCTCGTG
R:
CTGTTGGTGTCTTTGAGGCCC
Band lengths:
156-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]