BtaEX6053913 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62076198-62077831:+
Coord C1 exon
chr10:62076198-62076266
Coord A exon
chr10:62076362-62076487
Coord C2 exon
chr10:62077709-62077831
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTCATCTTGATAGATA
3' ss Score
8.42
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
CTGAGTACAAAATTCTTTGTCCTGGAGGAGAAGGTTTTCGACCCAACCCTATCACCGTTATATTGGAAG
Seq A exon
ATATTGATGAGTGCCAGGAGCTTCCAGGGTTGTGCCAAGGCGGGAAATGTATCAATACCTTCGGCAGCTTCCAGTGCCGCTGTCCAACGGGCTACTACCTGAATGAAGATACCCGAGTGTGTGATG
Seq C2 exon
ATGTGAATGAATGTGAAACTCCCGGAATCTGTGGTCCAGGGACATGTTACAACACTGTTGGCAACTACACCTGTATCTGCCCTCCAGACTACATGCAAGTGAATGGGGGGAATAATTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'42-50,'42-49,43-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATTCTTTGTCCTGGAGGAGA
R:
CCCCCATTCACTTGCATGTAGT
Band lengths:
171-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]