MmuEX6104620 @ mm10
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125342800-125344093:-
Coord C1 exon
chr2:125344025-125344093
Coord A exon
chr2:125343805-125343930
Coord C2 exon
chr2:125342800-125342922
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTTGTTTTCATTCTTACAGACA
3' ss Score
9.98
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CTGAGTATAAAATTCTTTGCCCTGGAGGAGAAGGTTTTCGTCCAAATCCCATCACCGTTATATTGGAAG
Seq A exon
ACATCGATGAGTGCCAGGAGCTTCCAGGGCTGTGCCAAGGGGGGAAGTGCATCAATACCTTTGGCAGCTTCCAGTGTCGCTGTCCAACTGGTTACTACCTGAATGAAGACACTCGAGTGTGTGATG
Seq C2 exon
ATGTGAACGAATGTGAGACTCCTGGAATCTGTGGTCCGGGGACCTGTTACAACACCGTTGGCAACTATACCTGCATTTGTCCTCCAGACTACATGCAAGTGAACGGGGGAAATAATTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'50-48,'50-47,51-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAATTCTTTGCCCTGGAGGAGA
R:
CCATGCAATTATTTCCCCCGT
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types