BtaEX6056649 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36428061-36430798:-
Coord C1 exon
chr12:36430513-36430798
Coord A exon
chr12:36429022-36429187
Coord C2 exon
chr12:36428061-36428273
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTGACTTTGCTGCTTTTCAGAGA
3' ss Score
8.54
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATTCTTGGATCTCCCAGTCAGCATCCTTTCCCCGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTCGCTTCCTAAACAGATTTTCCAGCCTTCTGCCCAACAGCAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTGCAGAAGGGACAGACAGCTTATCAGCGAAAAGGATCAGCTCACCTCTTCTGTTCTACCACCTGCCTTTCTTCCTTCTCTCACAAGCCTGCTCCAAAGAAACTTTGTGTTATGTGTAAAAA
Seq A exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGACTCAAGTGAATCCTTCCAGGAGTTCTGTAGCACATCTTGTCTGTCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTGAATAAATCAAGATGTACAATTTGTGGTAAACTAACAGAG
Seq C2 exon
ATTCGCCATGAAGTTAGCTTTAAAAACATGACTCATAAGCTGTGCAGTGACCATTGCTTTAACAGATACAGGATGGCTAATGGCCTTATAATGAACTGCTGTGAGCAGTGCGGCGAGTACCTACCCAGCAAAGGAGCTGGGAACAATGTCCTGGTTGTTGATGGTCAGCAGAAGAGGTTTTGCTGCCAGAGTTGTGTCAGTGAATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'15-14,'15-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.9=13.5)
A:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCTCACAAGCCTGCT
R:
CTGACACAACTCTGGCAGCAA
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]