GgaEX1003715 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178329991-178334840:-
Coord C1 exon
chr1:178334552-178334840
Coord A exon
chr1:178330992-178331157
Coord C2 exon
chr1:178329991-178330203
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTGTCTTTCAGAGA
3' ss Score
11.44
5' ss Seq
GAGGTCCGA
5' ss Score
1.56
Exon sequences
Seq C1 exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
Seq A exon
AGATATAACAACAATGAAAGGTACCATCGTTGCTCAAGTTGATTCAAGTGAGTCTTTCCAGGAGTTCTGCAGTACATCATGTTTATCCTTCTATGAAGATAAACAGAACCCTTCAAAAGGAGCTTTGAATAAGTCAAGATGCACTATCTGTGGTAAACTAACTGAG
Seq C2 exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'22-22,'22-20,27-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
A:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
ENSGALT00000043420fB4317
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAAGGGACAGACTGCTT
R:
GGGCAAATACTCCCCACAGTG
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]