BtaEX6057382 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012849 | COL4A1
Description
Bos taurus collagen, type IV, alpha 1 (COL4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166511]
Coordinates
chr12:88927544-88928876:-
Coord C1 exon
chr12:88928787-88928876
Coord A exon
chr12:88928650-88928694
Coord C2 exon
chr12:88927544-88927588
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTCTGTTCTTCCAGGGT
3' ss Score
11.63
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGAGAAAGAGGCCTCCCGGGGTTACAAGGGGTCATCGGGTTTCCCGGAATGCAAGGACCCGAGGGGCCACAGGGACCACCGGGACAGAAG
Seq A exon
GGTGACACCGGCGAGCCCGGACTGCCAGGCACTAAAGGCACAAGA
Seq C2 exon
GGACCCTCAGGAGTGCCTGGTTACCCTGGAAACCCAGGACTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012849-'15-7,'15-6,16-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF126692=P12=PD(33.8=76.7),PF0139113=Collagen=FE(39.7=100),PF0139113=Collagen=PU(32.8=66.7)
A:
PF0139113=Collagen=FE(19.2=100),PF0139113=Collagen=FE(23.0=100)
C2:
PF0139113=Collagen=PD(11.0=53.3),PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=PU(16.7=73.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGAGGCCTCCCGGG
R:
AGGAAGTCCTGGGTTTCCA
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]