MmuEX6034286 @ mm10
Exon Skipping
Gene
ENSMUSG00000031502 | Col4a1
Description
collagen, type IV, alpha 1 [Source:MGI Symbol;Acc:MGI:88454]
Coordinates
chr8:11245893-11247095:-
Coord C1 exon
chr8:11247006-11247095
Coord A exon
chr8:11246863-11246907
Coord C2 exon
chr8:11245893-11245937
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTGTTCTGCTGTAGGGT
3' ss Score
9.32
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCACATGGACCACCAGGACAAAAG
Seq A exon
GGTGATGCTGGAGAACCTGGACTTCCTGGCACAAAAGGGACGAGG
Seq C2 exon
GGACCCCCTGGAGCAGCTGGCTACCCTGGGAATCCCGGACTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031502-'8-5,'8-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF126692=P12=PD(33.8=76.7),PF0139113=Collagen=FE(29.0=100)
A:
PF0139113=Collagen=FE(14.0=100)
C2:
PF0139113=Collagen=FE(14.0=100),PF0139113=Collagen=PU(8.2=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGGCTTGCCAGGGTTG
R:
AGGAAGTCCGGGATTCCCAG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types