BtaEX6058772 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32717630-32721771:+
Coord C1 exon
chr15:32717630-32717785
Coord A exon
chr15:32719820-32719969
Coord C2 exon
chr15:32721640-32721771
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTAAAAACCTTTTCTTCTAGCCA
3' ss Score
5.86
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATTCACATATTCTTCCCTCCCCCACTCCCGGGCCCTCCACGTGTCTGCCCAATTACTACCGCTGCAGCAGTGGGGCCTGCGTGATGGACAGCTGGGTGTGCGACGGATATCGAGACTGTATAGACGGCTCGGACGAGGAGGCCTGCCCCTCGCCTG
Seq A exon
CCAATGTGACTGCTGCCTCCACGCCTACCCAGCTCGGGCGGTGCGACCGGTTTGAATTCGAGTGCCGTCAACCGAAGAAGTGTATCCCCAACTGGAGGCGCTGTGACGGCCACCAGGATTGCCAGGATGGCCAGGACGAGGCCAACTGCC
Seq C2 exon
CCACGCACAGCACGCTGACCTGCACGGCCCTGGAGTTCCAGTGCCAGGACGGTGAGGCCTGCATCATGCTCTCTGAGCGCTGCGACGGCTTCCTGGACTGCTCGGACGAGAGTGATGAGCATGCCTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'59-44,'59-43,60-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=69.8)
A:
PF0005713=Ldl_recept_a=WD(100=74.5)
C2:
PF0005713=Ldl_recept_a=WD(100=84.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTGTCTGCCCAATTACT
R:
ATGCTCATCACTCTCGTCCGA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]