DreEX0074511 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21621592-21626194:-
Coord C1 exon
chr15:21626042-21626194
Coord A exon
chr15:21622539-21622694
Coord C2 exon
chr15:21621592-21621720
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTTTATATCTTCCGCTCAGTGA
3' ss Score
6.18
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
GTGGCGAAGCTCTTCACACACCTGCACCGGGTCCTGCTACCTGTGCTCCTAATCGTTTCCGCTGTGGTTCTGGCGCATGTATTGTGGACACCTGGGTGTGTGACGGCTATGCGGACTGTCCTGATAGTAGTGATGAAGCAGGCTGTCCAACAG
Seq A exon
TGAAAGGCTCTGTGACTTCAGTGACGACTCTTCCTCCATCGGGCCGCTGTACTAAAGATCAGTTTCTGTGTGTGAAGCCTCCAGCATGTATTTCAGATTGGAAGCGCTGTGATGGTCATTCTCACTGCCTGGACGGATCTGACGAGGCCAACTGTC
Seq C2 exon
CCACTCATGGCCCTCTGCTCTGTGCGAATGGTACGCGGTGTGCAGACGGCGAGGCCTGTTTGCTGAACAGCGAGAGGTGTGATGGTTTTATAGACTGCTCTGACCGAAGTGACGAGCACAACTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'35-40,'35-39,36-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=71.2)
A:
PF0005713=Ldl_recept_a=WD(100=71.7)
C2:
PF0005713=Ldl_recept_a=WD(100=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTACCTGTGCTCCTA
R:
GTTGTGCTCGTCACTTCGGTC
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]