BtaEX6058995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35888256-35890333:+
Coord C1 exon
chr15:35888256-35888376
Coord A exon
chr15:35888995-35889106
Coord C2 exon
chr15:35890254-35890333
Length
112 bp
Sequences
Splice sites
3' ss Seq
TAACTAATATATTTTAACAGTAA
3' ss Score
5.41
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TGAGTTCTACTGTAGAAATCATTATAATGCAAGCCCTTTGTTGGGTACATGATGACTTGAATCAAGTAGATGTTGGCAGCTATGTTCTGAAAGTTTGTGGTCAAGAGGAAGTGCTACAGAA
Seq A exon
TAATCATTGTCTTGGAAGCCATGAACATATTCAAAACTGTCGAAAATGGGACACAGAGATTAAACTGCAACTTTTGACCTTCAGCGCAATGTGTCAAAATCTGGCCCGAACA
Seq C2 exon
GCGGAAGATGATGAAACACCTGTGGATTTAAACAAACACCTGCATCAAATAGAAAAACCTTATAAAGAAGTCATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(38.5=100)
A:
PF0079413=PI3K_rbd=PD(27.9=76.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATTATAATGCAAGCCCTTTGT
R:
CTCGTCATGACTTCTTTATAAGGTTT
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]