GgaEX1043784 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12870669-12872133:-
Coord C1 exon
chr5:12872013-12872133
Coord A exon
chr5:12871277-12871388
Coord C2 exon
chr5:12870669-12870748
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATTTGTTCAACAGTAA
3' ss Score
6.45
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TGAGCTCTCCCGTTGAGCTTATAATAATGCAGGCGCTTTGCTGGGTGCATGATGACTTGAATGAAGTGGATATTGGCAGCTATTTCCTGAAAGTCTGTGGCCAAGAAGAAGTTCTACAGAA
Seq A exon
TAAGCACTGCGTAGGAAGCCATGAATATATTCAGAACTGTCGGAAATGGGATACAGAAATTAAACTGCAGCTTGTGACCCATACTGAAATTTGCCGAGGTCTGGCGCGAACA
Seq C2 exon
GAAGAAGATGACAGTACACCCATAGACCTAACCAAACACCTCTACAAAGTAGAAAAGCCTTTCAGAGAACCTAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(38.5=100)
A:
PF0079413=PI3K_rbd=PD(27.9=76.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCGTTGAGCTTATAATAATGC
R:
ATGTTAGGTTCTCTGAAAGGCT
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]