BtaEX6062806 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54388959-54402051:+
Coord C1 exon
chr14:54388959-54389032
Coord A exon
chr14:54399491-54399602
Coord C2 exon
chr14:54401872-54402051
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTAATTTGCTTTAGGTG
3' ss Score
9.91
5' ss Seq
TACGTAAGC
5' ss Score
5.9
Exon sequences
Seq C1 exon
AACCCACCCGTACATCATGTGACAATCCAGGCGTGCCACGTCATGGATCTCAGAACAATACATTTGGATTTCAA
Seq A exon
GTGGGAAGTGTTGTGCAGTTCCACTGCAAAAAAGGACATCTTCTTCAAGGGTCTACAACACGGACTTGCCTTCCTGACCTCACATGGAGTGGAATTCAGCCTGAGTGCATAC
Seq C2 exon
CCCACAGCTGTAAACAGCCAGAAACTCCTGCTCATGCAAATGTAGTAGGAATGGACCTTCCATCCCATGGGTATACATTAGTTTATACCTGCCAGCCTGGCTTCTTCTTAGCTGGTGGAACAGAACATAGAGTGTGTAGATCTGATAACACCTGGACTGGAAAAGTTCCTGTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'61-66,'61-65,62-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
PF0008415=Sushi=PD(63.6=92.1)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCACCCGTACATCATGTG
R:
GAACTTTTCCAGTCCAGGTGT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]