HsaEX0017521 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112244394-112254326:-
Coord C1 exon
chr8:112254253-112254326
Coord A exon
chr8:112247020-112247131
Coord C2 exon
chr8:112244394-112244573
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTAATTTGCTATAGGTA
3' ss Score
9.7
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGCCTACCCAAACCTCTTGTGAAAACCCAGGTGTGCCTCGGCATGGATCTCAGAACAATACATTCGGATTTCAA
Seq A exon
GTAGGAAGTGTTGTACAGTTCCATTGCAAAAAAGGACACCTTCTCCAAGGGTCTACAACACGCACCTGCCTCCCTGATCTTACGTGGAGTGGGATTCAGCCTGAATGCATAC
Seq C2 exon
CCCACAGCTGTAAACAGCCAGAAACTCCTGCTCATGCAAATGTCGTAGGGATGGACCTTCCATCTCATGGGTATACACTGATTTATACCTGTCAGCCTGGCTTCTTCTTAGCAGGTGGAACAGAACATAGAGTGTGTAGATCCGATAACACCTGGACTGGAAAAGTTCCCATTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'104-107,'104-105,105-107
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
PF0008415=Sushi=PD(63.6=92.1)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTACCCAAACCTCTTGTG
R:
GAACTTTTCCAGTCCAGGTGT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development