BtaEX6063056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046358 | PABPC1
Description
Bos taurus poly(A) binding protein, cytoplasmic 1 (PABPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174568]
Coordinates
chr14:65825989-65828932:+
Coord C1 exon
chr14:65825989-65826126
Coord A exon
chr14:65826315-65826410
Coord C2 exon
chr14:65828660-65828932
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTATTTTAAGGGT
3' ss Score
9.93
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTGTGGATGAGATGAATGGAAAAGAGCTCAATGGAAAACAAATTTATGTTGGTCGAGCCCAGAAAAAAGTGGAACGACAGACAGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGACAGGATCACCAGATACCAG
Seq A exon
GGTGTTAACCTTTATGTGAAAAATCTTGACGATGGTATTGATGATGAACGTCTCCGGAAGGAGTTTTCTCCATTTGGCACAATCACCAGTGCAAAG
Seq C2 exon
GTTATGATGGAGGGTGGTCGCAGCAAAGGTTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACGGAAATGAACGGTAGAATTGTGGCCACCAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTTACTAACCAGTATATGCAGAGGATGGCAAGTGTAAGAGCTGTGCCCAACCCCGTAATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046358-'17-10,'17-9,19-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.4=32.6)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGACAGAACTTAAGCGCA
R:
GGTGGCCACAATTCTACCGTT
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]