GgaEX7002520 @ galGal4
Exon Skipping
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128378640-128379645:-
Coord C1 exon
chr2:128379508-128379645
Coord A exon
chr2:128379322-128379417
Coord C2 exon
chr2:128378640-128378912
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTTTTTTTCCTTAGGGT
3' ss Score
12.36
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTGTAGATGAGATGAATGGAAAAGAGCTCAACGGGAAACAAATCTATGTTGGACGGGCTCAGAAAAAAGTGGAAAGACAGACGGAGCTGAAGCGTAAATTTGAGCAAATGAAGCAGGACAGGATCACCAGATACCAG
Seq A exon
GGTGTAAACCTTTACGTGAAAAATCTCGATGATGGAATTGATGATGAACGTCTTCGAAAAGAATTCTCCCCATTCGGTACAATCACCAGTGCAAAG
Seq C2 exon
GTCATGATGGAAGGTGGACGCAGCAAAGGATTTGGGTTTGTCTGCTTTTCGTCACCAGAAGAAGCCACCAAAGCTGTCACAGAGATGAATGGTAGAATTGTGGCTACTAAACCACTGTATGTAGCTCTAGCCCAGCGTAAAGAAGAGCGCCAAGCTCATCTCACCAACCAGTATATGCAGAGAATGGCGAGTGTAAGAGCAGTCCCTAATCCAGTAATCAACCCCTACCAACCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450-'10-7,'10-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.302
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.4=32.6)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAGGACAGGATCACCA
R:
TCTTTACGCTGGGCTAGAGCT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]