BtaEX6063060 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046358 | PABPC1
Description
Bos taurus poly(A) binding protein, cytoplasmic 1 (PABPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174568]
Coordinates
chr14:65819746-65824058:+
Coord C1 exon
chr14:65819746-65819939
Coord A exon
chr14:65821567-65821682
Coord C2 exon
chr14:65823919-65824058
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGGTATACATTTTTCCCTAGGTG
3' ss Score
9.61
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CGGAGCGTGCTTTGGACACCATGAATTTTGATGTGATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGCGATCCATCACTTCGCAAAAGTGGAGTGGGCAACATATTCATTAAAAATTTGGATAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAG
Seq A exon
GTGGTTTGTGATGAAAATGGTTCCAAGGGTTATGGGTTTGTGCATTTTGAGACACAAGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGGATGCTTCTAAATGATCGCAAAGT
Seq C2 exon
ATTTGTTGGAAGATTTAAGTCTCGTAAAGAACGAGAAGCAGAACTTGGAGCTAGGGCAAAAGAGTTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046358-'9-6,'9-4,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
A:
PF0007617=RRM_1=FE(55.1=100)
C2:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCGCGATCCATCACTTC
R:
GGCGCTCATCATCCATGTCTT
Band lengths:
244-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]