GgaEX1041732 @ galGal4
Exon Skipping
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128381990-128383801:-
Coord C1 exon
chr2:128383607-128383801
Coord A exon
chr2:128383384-128383499
Coord C2 exon
chr2:128381990-128382129
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACAAAGTTTTTCTTTAATAGGTG
3' ss Score
7.42
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCTGAACGAGCTTTGGATACTATGAATTTTGATGTCATCAAAGGCAAACCGGTGCGCATTATGTGGTCCCAGCGTGATCCATCTCTACGCAAAAGCGGCGTTGGAAACATCTTCATCAAAAACTTGGACAAATCAATTGATAACAAAGCTTTGTATGACACATTTTCTGCTTTTGGAAACATCCTTTCTTGTAAG
Seq A exon
GTGGTATGTGATGAAAATGGATCCAAGGGTTATGGATTTGTACATTTTGAGACACAAGAAGCTGCAGAAAGAGCTATTGAAAAAATGAATGGTATGCTGCTTAATGACCGCAAAGT
Seq C2 exon
ATTTGTTGGAAGGTTTAAATCCCGCAAGGAACGTGAGGCAGAGCTTGGAGCCAGAGCAAAGGAATTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGAGACTTAAGGAACTCTTTGGCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(40.6=43.1)
A:
PF0007617=RRM_1=FE(55.1=100)
C2:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACGAGCTTTGGATACT
R:
CTTTGCTCTGGCTCCAAGCTC
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]