BtaEX6063879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17935341-17942280:-
Coord C1 exon
chr13:17942207-17942280
Coord A exon
chr13:17937407-17937561
Coord C2 exon
chr13:17935341-17935508
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTGTCAAACTTTCATTAAAGGTT
3' ss Score
6.65
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CAGAACTAGACTTAGAAATGACATCAGAGGAAGAAGAAGAAAAACCTGTTGGAGATAAAAATAACCATTCCCAG
Seq A exon
GTTGAAGAAGAAAAGAAGAAGCATAAAAGTAGTGAAGTGGAAATATCAGACAATGTATGTGATACTGCTGATGAGAGTGGATTGATTCAGCAGAGAAAGAGTGGAGGAAACAGCAGTCAGGAGTTTGCTGCTATGGAGAATGAAGGTTCTGATAG
Seq C2 exon
CGATCCTGACGTGCATAGGAAGGAAGTAAAGAAAAAGGACAATAGCAAATGGACACCAGAAGGATGTGTGACTGCACCCATATTTGAAAAGACCGATTCACTGACTGGTGGTCTGCTGCATGTTAATGATGACAGCATTTTAAGTGAAGTGGATCAGGATGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'17-20,'17-18,19-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTAGAAATGACATCAGAGGAA
R:
TGTCATCATCCTGATCCACTTCAC
Band lengths:
234-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]