MmuEX6006487 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118482220-118485161:-
Coord C1 exon
chr6:118485097-118485161
Coord A exon
chr6:118483333-118483484
Coord C2 exon
chr6:118482220-118482387
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGTCCACTTTACATTAAAGGTT
3' ss Score
6.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGCCAGAATCAGTATCAAGAGAAGAACAGACAAGGCTCAGTGGCAGCGAGGACAGCCAGCAGAAG
Seq A exon
GTTGAAGAAAAGAGAAAATACAAAAATAACGAAGCAGAACCCTCAGGAAATCTATACAGCGGTGCTGCTGACGGCGGTGCTGATGTAAAGCCACAGAGTGGAGACACTGAGAACCAGCAGTCTCCCCGGGAGGGGAGTGAGGGACGTGGCAG
Seq C2 exon
TGGTCCTGCCTTGCTTATGAAGGAAGCAAAGAAAATGGAAAATGAAAAATGGGTATCCAGAGAGCCCGCGAGGACGGCAATGAGTGAGCGCACCGGCTTACCAACTGGTGGCTGGCCACAAATGCAGGATGGTTCCTGCTGGAGTGACACGGACCAAAGTGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAATCAGTATCAAGAGAAGA
R:
GCTTCACTTTGGTCCGTGTCA
Band lengths:
230-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: