BtaEX6063984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015910 | ITGB1
Description
Bos taurus integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174368]
Coordinates
chr13:20281060-20282633:+
Coord C1 exon
chr13:20281060-20281298
Coord A exon
chr13:20281513-20281735
Coord C2 exon
chr13:20282401-20282633
Length
223 bp
Sequences
Splice sites
3' ss Seq
AATGAGATTTTTAATTGCAGGAA
3' ss Score
6.1
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGCAACGAGGGACGTGTCGGGAGACACTGTGAATGTAGCACAGATGAGGTGAACAGCGAAGACATGGATGCCTACTGCAGGAAAGAAAACAGTTCAGAAATCTGTAGCAACAATGGAGAGTGTGTCTGTGGACAGTGTGTGTGTAGGAAGAGGGACAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTGTGATAATTTCAACTGTGATAGATCCAATGGCTTAATATGTGGAG
Seq A exon
GAAATGGTGTTTGCAAGTGTCGAGTGTGTGAGTGCAACCCTAACTACACCGGCAGCGCCTGTGACTGTTCTCTGGATACCACTTCCTGCATGGCCGTGAATGGACAGATCTGCAATGGCCGCGGCGTCTGCGAGTGTGGTGCCTGTAAGTGTACAGACCCCAAGTTCCAAGGGCCAACCTGTGAGATGTGTCAGACCTGCCTTGGAGTCTGTGCTGAGCATAA
Seq C2 exon
AGAATGTGTTCAGTGCCGAGCCTTCAATAAAGGAGAGAAGAAAGACACATGTGCTCAGGAATGTTCACATTTCAACATTACCAAGGTTGAAAATCGGGACAAATTGCCCCAGCCAGGCCAGGTGGATCCCTTGTCCCACTGTAAGGAGAAGGACGTTGACGACTGCTGGTTCTACTTCACATACTCCGTGAATGGGAACAATGAGGCCACTGTTCATGTTGTAGAGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015910-'34-28,'34-27,36-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
A:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.5=5.3)
C2:
PF079657=Integrin_B_tail=FE(87.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCGAAGACATGGATGCC
R:
TGGGGCAATTTGTCCCGATTT
Band lengths:
298-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]