RnoEX0045176 @ rn6
Exon Skipping
Gene
ENSRNOG00000010966 | Itgb1
Description
integrin subunit beta 1 [Source:RGD Symbol;Acc:2927]
Coordinates
chr19:61714402-61716959:+
Coord C1 exon
chr19:61714402-61714640
Coord A exon
chr19:61714845-61715067
Coord C2 exon
chr19:61716727-61716959
Length
223 bp
Sequences
Splice sites
3' ss Seq
AATGATCTTTTTCATTGCAGGAA
3' ss Score
10.02
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGCAATGAGGGTCGTGTTGGGAGACACTGTGAATGTAGCACAGATGAAGTGAACAGTGAAGACATGGATGCTTACTGCAGAAAAGAGAACAGCTCAGAGATCTGCAGTAACAATGGAGAGTGTGTCTGTGGACAGTGTGTGTGCAGGAAGAGAGAGAATACAAATGAAATTTACTCCGGCAAATTCTGCGAGTGTGATAACTTCAACTGCGATAGGTCCAACGGCTTAATCTGTGGAG
Seq A exon
GAAATGGTGTGTGCAGGTGTCGTGTCTGTGAATGCTATCCCAACTACACTGGCAGTGCATGTGACTGTTCCTTGGACACTGTTCCATGCGTAGCGACAAATGGTCAGATCTGCAATGGCCGGGGCATCTGTGAATGTGGTGCTTGTAAGTGCACAGATCCCAAGTTCCAAGGGCCAACCTGTGAGACCTGTCAGACCTGCCTTGGTGTCTGTGCAGAGCATAA
Seq C2 exon
AGAATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAAAAAGACACGTGTGCACAGGAGTGCTCCCATTTCAACCTCACTAAAGTGGAAAGCAGGGAGAAGTTGCCCCAGCCTGTGCAGGTGGACCCTGTGACCCACTGCAAGGAGAAGGACATTGATGACTGCTGGTTCTATTTCACCTACTCAGTGAACAGCAACGGTGAAGCTCACGTGCATGTTGTGGAGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010966-'18-18,'18-16,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=46.9),PF079748=EGF_2=PU(32.3=12.3)
A:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.5=5.3)
C2:
PF079657=Integrin_B_tail=FE(87.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGGGTCGTGTTGGGAG
R:
CTCCTGTGCACACGTGTCTTT
Band lengths:
297-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]