BtaEX6064030 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22412868-22415428:-
Coord C1 exon
chr13:22415336-22415428
Coord A exon
chr13:22414019-22414123
Coord C2 exon
chr13:22412868-22413039
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTATTTACTTTGCAGGTA
3' ss Score
10.54
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTTTATTATAAATCTCAGATGGGAAGAGCTACAGCTTTAAGTGTAACTCCTGAAATGGAAAGAGTAAAGAAGAATCAAGAAAATATTAGTTCG
Seq A exon
GTAAAATATACCCAGGACCAGAAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATACACCTGGTCTCAGACATGTCAAAGAAGCTCAAAATCGTATTTCAATG
Seq C2 exon
GTGAAATATCATGAAGATTTTGAAAAGACAAAGGGAAGGGGCTTTACTCCTGTTGTGGATGACCCTGTGACAGAGCGAGTGAGAAGGAACACCCAGGTCGTCAGCGATGCTGCCTATAAAGGTGTCCATCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339-'31-35,'31-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=0.743 C2=0.431
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(55.2=51.6)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCAGATGGGAAGAGCTACAGC
R:
CAGGTCTCCTGTCCATCTCCA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]