GgaEX7001766 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18221892-18225701:+
Coord C1 exon
chr2:18221892-18221984
Coord A exon
chr2:18224271-18224375
Coord C2 exon
chr2:18225530-18225701
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTTGCTGTTTTGCAGGTG
3' ss Score
11.46
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTTCACTACAGAGAGCAGCCTGGCAAAGCTACTGCTGTGAGCATCACTCCTGAGATAGAGAGAGTCAAGAAGAATCAAGACAATATCAGCTCG
Seq A exon
GTGAAGTACAGCAGTGATCAGAGGCAGATGAAAGGTAGACGTAGTGTGATTCTAGACACACCTGAGCTAAGGCATGTCAAAGAAACACAAAACAACATCTCAATG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-'39-44,'39-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.886 C2=0.428
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Skipping Isoform:
ENSGALT00000012903fB14147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTACAGAGAGCAGCCTGG
R:
TCCAGGTCTTCTATCCATTTCAACT
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]