RnoEX6054302 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84165901-84168283:-
Coord C1 exon
chr17:84168191-84168283
Coord A exon
chr17:84166941-84167045
Coord C2 exon
chr17:84165901-84166072
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTACTTTTGCAGGTG
3' ss Score
11.61
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTTTATTATAAAGGCCAATTGGGAAGGGCTACAGCTTTGAGCGTAACGCCCGAAATGGAAAGAGTAAAGAAGAATCAAGAAAATATCAGCTCG
Seq A exon
GTGAAATACACTCAGGACCATAAACAAATGAAAGGTAGACCATGTGTGATCTTAGATACACCTGCTTTGAGACATGTAAAAGAAGCACAAAATCATGTTTCCATG
Seq C2 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452-'65-53,'65-52,67-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.400 C2=0.416
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Main Skipping Isoform:
ENSRNOT00000075983fB9517
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGGCCAATTGGGAAGGGC
R:
CCCAGGTCTTCTATCCATCTCCA
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]