BtaEX6065535 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015581 | COL9A3
Description
collagen, type IX, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2219]
Coordinates
chr13:55023927-55024485:-
Coord C1 exon
chr13:55024453-55024485
Coord A exon
chr13:55024140-55024286
Coord C2 exon
chr13:55023927-55023981
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTGTTTCCCTCCAGTCT
3' ss Score
10.49
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGTCCCAGCGGCCCTGTTGGCCCCAAAGGAGAG
Seq A exon
TCTGGCAGTCGCGGGGAGCTGGGCCCTAAGGGCATCCAGGGCCCCAATGGCACCAGCGGCGTAGATGGCGTCCCTGGCCCCCCTGGCCCCGTGGGCCTCCAGGGCGTGCGAGGCGTGCCTGGCATCACTGGAAAACCTGGGGTCCCG
Seq C2 exon
GGGAAAGAAGCCAGCGAGCAACACATCAGGGAGCTGTGCGGGGGGCTGGTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015581-'33-29,'33-28,34-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.974
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.9=100),PF0139113=Collagen=PU(11.1=63.6)
A:
PF0139113=Collagen=PD(9.0=12.2),PF0139113=Collagen=FE(76.2=100)
C2:
PF0139113=Collagen=PD(7.9=26.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]