HsaEX0016695 @ hg38
Exon Skipping
Gene
ENSG00000092758 | COL9A3
Description
collagen type IX alpha 3 chain [Source:HGNC Symbol;Acc:HGNC:2219]
Coordinates
chr20:62835921-62836532:+
Coord C1 exon
chr20:62835921-62835953
Coord A exon
chr20:62836187-62836333
Coord C2 exon
chr20:62836478-62836532
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGTTCCTCTGCAGTCT
3' ss Score
10.83
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGTCCCAGCGGCCTGGTCGGACCCAAAGGAGAG
Seq A exon
TCTGGCAGTCGAGGGGAGCTGGGCCCCAAAGGCACCCAGGGTCCCAACGGCACCAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTGGGCCTGCAGGGCGTCCCGGGTGTTCCTGGCATCACGGGGAAGCCGGGAGTTCCG
Seq C2 exon
GGGAAGGAGGCCAGCGAGCAGCGCATCAGGGAGCTGTGTGGGGGGATGATCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092758-'42-55,'42-50,46-55
Average complexity
S
Mappability confidence:
93%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.5=100),PF0139113=Collagen=PU(11.1=63.6)
A:
PF0139113=Collagen=PD(10.8=16.3),PF0139113=Collagen=FE(76.2=100)
C2:
PF0139113=Collagen=PD(7.9=26.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development