BtaEX6068375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38074509-38076406:-
Coord C1 exon
chr16:38076299-38076406
Coord A exon
chr16:38075427-38075612
Coord C2 exon
chr16:38074509-38074694
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCAATATTTTGTCCTTACAGTCA
3' ss Score
8.93
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
CCTCCTGCCAGGACATGTCCTGCAGCAAGCAAGGAGAGTGCATTGAGACCATTGGGAACTACACCTGCTCCTGTTACCCTGGATTCTATGGACCGGAGTGTGAATATG
Seq A exon
TCAGAGAGTGCGGCGAGTTTGATCTTCCTCAACATGTGCACATGAACTGCAGCCACCCTCTTGGAAACTTCTCTTTCAACTCACACTGCAGCTTCCACTGTGCTGAAGGCTATGCGCTGAACGGACCCAGTGAGCTGGAGTGTTTGGCTTCTGGAATCTGGACGAATTCACCCCCACAGTGTGTAG
Seq C2 exon
CTGTCCAGTGCCCGGCTCTGAAGTCTCCGGAGCAAGGAAGCATGAGCTGTGTCCAGTCCGCGGAAGCATTCCAGCACCAGTCCAGCTGCAGCTTCAGCTGCGAAGAGGGATTCGAATTAGTTGGGCCAGAGGTAGTGCACTGCACAGCCTTGGGGGTGTGGACAGCCCCAACTCCGGTGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=81.1),PF0008415=Sushi=PU(4.7=8.1)
A:
PF0008415=Sushi=PD(93.8=95.2)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAACTACACCTGCTCCT
R:
CTTTACACACCGGAGTTGGGG
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]