RnoEX6045151 @ rn6
Exon Skipping
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82442688-82445419:+
Coord C1 exon
chr13:82442688-82442795
Coord A exon
chr13:82443471-82443656
Coord C2 exon
chr13:82445234-82445419
Length
186 bp
Sequences
Splice sites
3' ss Seq
CACCATTTTGTTCCTTACAGTCC
3' ss Score
8.99
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CCTCCTGCCAGGACATGTCTTGCAACAGCCAAGGGGAGTGCATCGAGACCATTGGGAGCTACACCTGCTCCTGCTACCCGGGCTTCTATGGGCCAGAGTGTGAATACG
Seq A exon
TCCAAGAGTGTGGAAAATTCGACATCCCGCAACACGTTCTCATGAACTGCAGCCACCCTCTGGGGGACTTCTCCTTCAGCTCACAGTGCACCTTCAGCTGTCCTGAGGGCTATGACCTGAACGGACCCAGTGAGATGCAATGTTTGGCCTCTGGAATCTGGACAAATAATCCCCCGCAGTGTAAAG
Seq C2 exon
CTGTGCAGTGCCAGAGCCTGGAAGCCCCTCTCCATGGAACCATGGACTGTACACACCCATTGGCTGCCTTTGCCTATGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATCGGATGAGGGGCTCTGACATACTCCACTGCACTGACTCTGGTCAGTGGAGTGAACCATTGCCAACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=81.1)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATCGAGACCATTGGGAG
R:
GGTTGGCAATGGTTCACTCCA
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]