DreEX6046129 @ danRer10
Exon Skipping
Gene
ENSDARG00000009123 | sele
Description
selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
Coordinates
chr20:34072291-34072955:-
Coord C1 exon
chr20:34072845-34072955
Coord A exon
chr20:34072562-34072753
Coord C2 exon
chr20:34072291-34072482
Length
192 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTCTGCTGTTTAGTTG
3' ss Score
6.2
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTTCCTGCGCGAGTGACTCCTGTGTCAGTGGTCATGGAGAGTGTGTAGAAACCATAAACAGTCATACATGCTCATGCTTTGAAGGCTTCTATGGAAAAGTATGTGAAAATG
Seq A exon
TTGTTAAATGTGAACCAAATGAAGTCAATGCATTGGATCATTCTAGTAAGCAGTGCTCTCATCCTCATGGAAACTTCGCATATGACTCTCAGTGTGAATATTCATGTGAGGAGGGTTATGAACTGAAGGGTTCCAGTACAACGAGATGCAATTTTACAGCGGAGTGGACAAGCAAACCACCATCTTGTGAGC
Seq C2 exon
TTGTTCAATGCCCACAGCTGAACAAACCACTGAAAGGTGGCATGCAGTGTAATCATCCGATGGGTCAGTTCAGCTATCAGTCCAGCTGTGAGTTTGTGTGTGATGAAGGATACAAACTGCGAGACTCCAGCTCTTCTACTCTGATCTGTGGAGCAACGGGACACTGGAATGATTCACAGCCCACTTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009123-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=84.2),PF0008415=Sushi=PU(4.5=7.9)
A:
PF0008415=Sushi=PD(93.9=95.4)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGTCAGTGGTCATGGA
R:
CCGTTGCTCCACAGATCAGAG
Band lengths:
253-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]