BtaEX6068396 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007307 | SELE
Description
Bos taurus selectin E (SELE), mRNA. [Source:RefSeq mRNA;Acc:NM_174181]
Coordinates
chr16:38185392-38187663:-
Coord C1 exon
chr16:38187478-38187663
Coord A exon
chr16:38187191-38187379
Coord C2 exon
chr16:38185392-38185568
Length
189 bp
Sequences
Splice sites
3' ss Seq
AACTGGGACATGTGTTGCAGCTG
3' ss Score
4.05
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGGTTAAGTGTGATGCTTTGTCAAATCTGGACAATGGAGTGGTAAACTGTTCCCCAAACCATGGAAGCCTCCCATGGAACACCACCTGTACGTTTGAGTGTCAGGAAGGATATAAACTCACTGGACCCCAGCACCTACAGTGTACCTCCTCTGGGATTTGGGACAACAAGCAGCCAACATGTAAAG
Seq A exon
CTGTAAGCTGTGCAGCCATCAGCCATCCTCAGAACGGCACTGTGAACTGTAGCCACTCCGTGGTTGGAGACTTTGCCTTCAAGTCATCCTGCCACTTCACCTGTGCAGAGGGCTTCACGTTGCAGGGGCCAACCCAGGTTGAATGCACTGCCCAGGGACAATGGACACAGCGGGTCCCAGTTTGTGAAG
Seq C2 exon
TGGTACGATGTTCACGTTTGGACGTTTCTGGAAAGCTCAACATGAACTGCAGTGGGGAGCCCGTGCTTGGCACTGAGTGTACGTTTGCATGTCCTGAAAGATGGACGCTCAATGGCTCTGTAGTGCTGACCTGCGGTGCTACAGGACACTGGTCTGGGATGCTGCCAACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007307-'5-12,'5-5,6-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=92.2)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAAGCCTCCCATGGAAC
R:
CTACAGAGCCATTGAGCGTCC
Band lengths:
250-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]