RnoEX6045132 @ rn6
Exon Skipping
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82358678-82360292:+
Coord C1 exon
chr13:82358678-82358863
Coord A exon
chr13:82358966-82359154
Coord C2 exon
chr13:82360104-82360292
Length
189 bp
Sequences
Splice sites
3' ss Seq
GAATGGTGCTTGCATTACAGCTG
3' ss Score
5.55
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGGTTGAATGTAAAGCTTTGACCCAACCTGCCCACGGAGTCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAATACAACGTGCACGTTTGATTGTGAGGAAGGGTACAGGAGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCCGGTGTCTGGGACAACGAGAAGCCATCGTGCAAAG
Seq A exon
CTGTGACCTGTGATGCCATCCCTCGGCCTCAGAATGGCTCTGTGAGCTGCAGCAACTCAACGGCTGGAGCGCTTGCCTTTAAGTCTTCCTGTAATTTTACCTGTGAGCACAGTTTCACATTGCAGGGCCCAGCCCAGGTTGAATGCAGTGCACAAGGGCAGTGGACACCACAAATCCCAGTGTGCAAAG
Seq C2 exon
CTTCCCAGTGTGAAGCCTTATCTGCACCACAGCGAGGCCACATGAAATGTCTTCCCAGTGCCTCTGCACCCTTCCAAAGTGGGTCCAGTTGTAAGTTCTCCTGTGACGAAGGATTTGAATTGAAGGGATCAAGAAGGCTTCAGTGTGGTCCAAGAGGGGAGTGGGACAGCGAAAAGCCCACATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=92.2)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCACGTTTGATTGTGAGG
R:
CTCTTGGACCACACTGAAGCC
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]