DreEX6046118 @ danRer10
Exon Skipping
Gene
ENSDARG00000042138 | selp
Description
selectin P [Source:ZFIN;Acc:ZDB-GENE-110107-2]
Coordinates
chr20:34052170-34054159:-
Coord C1 exon
chr20:34053971-34054159
Coord A exon
chr20:34052499-34052684
Coord C2 exon
chr20:34052170-34052355
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATGGTTTGGATTTATCACAGTGG
3' ss Score
3.51
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
CTGTCAAATGTCAGGCAATCATTGATGCCCCTCGTGGTTGGACAATGATCTGCACTCATCCGCTTTCCATGAATAGCTTCAACTCCAGCTGTGAGTTTGAGTGTAAGGAGGGTTTTGAGCTCAATGGTTCAAAGACAACCTGGTGTGACCACACTGGCCACTGGACAGACAAAGCCCCCACTTGCACAG
Seq A exon
TGGTGACCTGTAATCCCCTCCTGGCCCCTGCAAATAGCAGTTTGGCCTGTGCTGATCCACTGGGAAAATCCTCCTTCCGTTCTTCTTGCAATGTTACCTGTGATGAGGGATACAAACTAAGAGGAAGAGCCGCACTAACCTGCCAGAGAGAAGGCAACTGGTCAGCACCATTGCCTGTATGTGAAG
Seq C2 exon
TGGTAAAGTGTGACTCACTGAAACCCATCGCGAACGGCTCCTACCAATGTCATGACTCTGTCGATGAGTTTTCTTATGGCTCCACTTGTTGGTTTAAATGTGATTCTGGTTTTGTCCACAATGGTACAAATTCCACTCACTGCACCAAACAGGGGAACTGGAGTCATATATCACCTATTTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042138-'7-7,'7-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.2)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGTTTTGAGCTCAATGGT
R:
CTCCAGTTCCCCTGTTTGGTG
Band lengths:
246-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]