BtaEX6069285 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50771702-50782666:+
Coord C1 exon
chr16:50771702-50771824
Coord A exon
chr16:50781508-50781633
Coord C2 exon
chr16:50782544-50782666
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACTCCTCTCGGGTCTCCAGCCA
3' ss Score
4.39
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ACGTGGACGAGTGCCAGGTGCACAATGGCGGCTGCCAGCACCGGTGTGTGAACACCCCAGGCTCCTACTTCTGCGAGTGCAAGCCCGGCTTCCGTCTCCACGCGGACGGCAGGACCTGCCTGG
Seq A exon
CCATCAACTCCTGCGCTGTGGGCAATGGTGGCTGCCAGCACAACTGCGTCCAGCTCACAGTGACCCAGCACCGCTGCCAATGCCGGCCCGAGTTCCAGCTCCAGGAGGATGGCAGGCGCTGCGTCC
Seq C2 exon
GGAGAAACCCATGCGCAGACAGGAATGGCGGCTGCATGCACAGGTGCCGGGCACTCCGGGGCCTTGCCCACTGCGAGTGCCGCGCGGGCTACCAGCTGGCAGTAGACCGCAAGGCCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGACGAGTGCCAGG
R:
GCAGGCCTTGCGGTCTAC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]