GgaEX1035875 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:980057-984612:+
Coord C1 exon
chr21:980057-980180
Coord A exon
chr21:984283-984408
Coord C2 exon
chr21:984490-984612
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTGTGCTTTCCCAGCGC
3' ss Score
8.21
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GATGTGGATGAGTGCCAGGTTCACAACGGGGGCTGCCAGCACAGATGTGTGAACACCTTTGGTTCCTATTACTGTGAGTGCAAGCCGGGCTTTCGCCTGCATGCAGATGGTAGAACCTGCATTG
Seq A exon
CGCTGAACTCGTGTGCGGTGAACAACGGTGGCTGCGAGCACGACTGCGTGCAGCTGACGGCCAACCAGCACCAGTGCCGCTGCCGCCGGCAGTATCGGCTGCGGGAGGACGGCCGGCGCTGCGCCC
Seq C2 exon
CCTGGAGCCCCTGCGCTCAGAGGAACGGGGGCTGCATGCAGCTCTGCAGGGATGTCCAGGGAGCAGCGCGCTGCGAGTGCCGCCCCGGATACCGGCTGGGACCTGATGGCAGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTGCCAGGTTCAC
R:
CTCTGCCATCAGGTCCCAGC
Band lengths:
235-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]