GgaEX1035875 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1010130-1014107:+
Coord C1 exon
chr21:1010130-1010255
Coord A exon
chr21:1013778-1013903
Coord C2 exon
chr21:1013985-1014107
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTGTGCTTTCCCAGCGC
3' ss Score
8.21
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CAGATGTTGATGAGTGCCAGGTTCACAACGGGGGCTGCCAGCACAGATGTGTGAACACCTTTGGTTCCTATTACTGTGAGTGCAAGCCGGGCTTTCGCCTGCATGCAGATGGTAGAACCTGCATTG
Seq A exon
CGCTGAACTCGTGTGCGGTGAACAACGGTGGCTGCGAGCACGACTGCGTGCAGCTGACGGCCAACCAGCACCAGTGCCGCTGCCGCCGGCAGTATCGGCTGCGGGAGGACGGCCGGCGCTGCGCCC
Seq C2 exon
CCTGGAGCCCCTGCGCTCAGAGGAACGGGGGCTGCATGCAGCTCTGCAGGGATGTCCAGGGAGCAGCGCGCTGCGAGTGCCGCCCCGGATACCGGCTGGGACCTGATGGCAGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=83.7)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGTTGATGAGTGCCAGGT
R:
CATCAGGTCCCAGCCGGTATC
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]