DreEX6077676 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35434970-35442122:+
Coord C1 exon
chr15:35434970-35435092
Coord A exon
chr15:35441795-35441920
Coord C2 exon
chr15:35442000-35442122
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTGACTATTTCCAGCGG
3' ss Score
6.1
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
ATATAGATGAGTGTGAGGAGATGAATGGCGGCTGCCAGCAGACTTGTGTGAACACACTTGGTTCCTATCACTGTGAGTGCAGTGAGGGTTTCCGCATACATGCTGATGCTCGCACATGCATAG
Seq A exon
CGGTGAACTCTTGCTCAGTGAAGAATGGCGGATGTGAACACAAGTGTGTGGATTTGGGAAACGAACAGTACAAGTGTGAATGTCGAAGCAACTACCAGCTCAAGAGAGACGGAAAGCACTGTGAAC
Seq C2 exon
TGAAGGACCCCTGTAAAGATCATAACGGCGGATGTTCTCAAATCTGCACTGATGTGAATGGACTGGTTCAGTGCAGCTGCAGAACAGGATTCACATTGGCAAATGACCTCAGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGATGAGTGTGAGGAGATGAATGG
R:
TCACATCTCCTGAGGTCATTTGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]